Package index • LakeEnsemblR

All functions

analyse_ncdf() analyze_ncdf(): Analyse the output netCDF

analyse_strat() analyze_strat(): Returns stratification statstics

calc_fit(): Calculate model performance metrics

calc_hmix(): Estimate mixed-layer depth from temperature profiles

calc_stats(): Calculate model fitness and stratification statistics

cali_ensemble(): Calibrate models

check_master_config(): Check master config file

export_config(): Export model configuration setups

export_dirs(): Creates directories for each model

export_extinction(): Export extinction coefficients

export_flow(): Export LakeEnsemblR standardised flow files to model specific driver format

export_init_cond(): Export initial conditions into each model setup from the LakeEnsemblR standardized input for observed temperature profile

export_location(): Export location settings for each model

export_meteo(): Export LakeEnsemblR standardized input to model specific driver format

export_model_parameters(): Export model-specific parameters

export_output_settings(): Export output settings for each model

export_time(): Export time settings for each model

format_inflow(): Format inflow data for each model

format_outflow(): Format outflow data for each model

get_config_value(): Extract value from any LER model config file

get_json_value(): Extracts values from a json file

get_mylakeconfig_value(): Extracts values from the MyLake config file

get_output(): Get output data for each model

get_template(): Copies LakeEnsemblR template from package to specified folder

get_yaml_multiple(): Extract values from yaml file

input_config_value(): Inputs value into any LER model config file

input_json(): Input values into json file

input_mylakeconfig(): Inputs value into the MyLake config file

input_yaml_multiple(): Inputs values into yaml file

load_LHC_results(): Plot results of LHC calibration

load_var(): Extract variables from NetCDF file

plot_ensemble(): Function to plot results of the ensemble run

plot_heatmap(): Plot heat map of ensemble model output

plot_LHC(): Plot results of LHC calibration

plot_resid(): Function to plot residuals for each model of the ensemble run

read_flake_out(): Extract FLake output

run_ensemble(): Run Ensemble of lake models

run_lint(): Runs lint for LER script

format_met() scale_met(): Format meteorological data for each model

time_average(): Calculates the average of an irregular time series