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Version 1.1

version 1.1.0

Changes

  • Inflows and outflows are now separate inputs and can be different from each other
  • Multiple inflows and outflows can be simulated.
  • Outflows can exit the lake at specified depths, or at the surface.
  • Water level (“w_level”) is now a potential output of LakeEnsemblR.
  • “max_members” can be specified, which sets the number of members that the output-netcdf can have
  • LakeEnsemblR now works with the latest version of Simstrat (v3.0.1), which included changes in some parameter names
  • Model-specific template config files are removed from the LakeEnsemblR package and are instead retrieved from the model-specific packages

Bug fixes: - get_yaml_multiple and input_yaml_multiple; works now if the first key is the highest level in the yaml file - cali_ensemble for FLake; depths are now sorted - Initial conditions Simstrat; Simstrat now always starts at the specified initial water lvl - plot_heatmap now works in lakes where the water level changes

The setup of the LakeEnsemblR configuration file changed. More information can be found on: https://github.com/aemon-j/LakeEnsemblR/wiki/From-v1.0-to-v1.1

version 1.1.1

Changes

Bug fixes: - fixed error in formatting of Simstrat flow where a flow of 0 would lead to NA in the Simstrat inflow forcing files

version 1.1.2

Changes

  • it is now possible to add sensible and latent heat fluxes to the output netcdf file by adding q_sens and/or q_lat to the list of wanted output variables in the yaml config file

version 1.1.3

Changes

Bug fixes: - Calculation of degrees East longitude in output netcdf file was corrected, with values 180-360 for locations on the Western Hemisphere

version 1.1.4

Changes

Bug fixes: - Fixed error in export_extinction that caused GOTM to crash because of formating of the datetime column

version 1.1.5

Changes

Bug fixes: - Fixed error in export_flow when using a start or stop date that was not included in the inflow or outflow file - Fixed bug in get_output which would show wrong NA values in Simstrat temperature output due to water level change when including depths in observation files that were not included in the Simstrat output.

version 1.1.6

Changes

Bug fixes: - Fixed error in analyse_ncdf when ice is not present in the ncdf file and if not enough observational data.

version 1.1.7

Changes

Bug fixes: - Warning message shows up when pre-v1.1 mass-balance argument is used, pointing towards a solution when the outflows section is missing.

version 1.1.8

Changes

  • To convert temperature observations to long-format, the dcast function within run_ensemble and cali_ensemble now uses mean(..., na.rm = TRUE) as aggregation function. Previously, this could cause problems in case of non-unique observations (a warning is thrown if these exist).
  • added a check if the mean depth is below 1.5 meters as this could cause the export_init_cond function to crash for FLake as calc_hmix has a default value of 1.5 m for a minimum depth

version 1.1.9

Changes

  • fixed a bug in the LHC calibration where if a model would crash on the first run the headding of the ouput file would be wrong
  • Add the number of rows in the hypsograph file to the calculated max_layers parameter in GLM, to avoid failure of Lagrangian algorithm